vcfViewer

A toolkit for visualizing variant call format (VCF) file data.

Developed by Tom Sasani for MDCRC 6521 at the University of Utah.

About

vcfViewer is a basic toolkit that allows users to create useful visualizations of VCF metadata in bokeh. For example, users can plot quality scores,

Usage

To visually determine which variants in a VCF meet a quality score threshold, simply run:

python plot_qual.py [vcf] [threshold]

Dependencies

bokeh

cyvcf2