Core BioPerl 1.x code

Rapid large-scale prokaryote pan genome analysis

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze an...

The Ensembl Compara Perl API and SQL schema

Bio::Phylo - Phyloinformatic analysis using Perl

A set of tools to analyse the output from TraDIS analyses

Multilocus sequence typing by blast using the schemes from PubMLST

Graph-based mapping of long sequences, noisy or HiFi.

Improve the quality of a denovo assembly by scaffolding and gap filling

CoGe (Comparative Genomics) Platform

Practical, reusable scripts for bioinformatics

Tools for querying and analysis of genomic data

Collection of scripts for bacterial genomics

Search guide-RNA sequences given a genome or gene sequence

A Galaxy based system for identifying retrotransposons in genome

Programming Solutions to Bioinformatic Rosalind Problems

Bystro genetic analysis (annotation, filtering, statistics)

Automatically calculate phylogenetic trees from bacterial core genes

Fork of the Polysolver project

Collection of open source Bioinformatics software and tools

PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and ...

MetaCRAST: reference-guided CRISPR detection in metagenomes

Miscellaneous bioinformatics scripts written by me for myself and other people

Alien build script for libBigWig

Crawl any filesystem for genome data, provides one-click opening in IGV

SVG Genetic Map Drawer

Nextflow workflow for automatic repeat detection, classification and masking

Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow

perl and python