bioperl/bioperl-live
Core BioPerl 1.x code
Perl - Other - Last pushed - 210 stars - 147 forks
sanger-pathogens/Roary
Rapid large-scale prokaryote pan genome analysis
Perl - GPL-3.0 - Last pushed - 123 stars - 97 forks
ewels/ClusterFlow
A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
Perl - GPL-3.0 - Last pushed - 60 stars - 18 forks
LANL-Bioinformatics/EDGE
EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze an...
Perl - Other - Last pushed - 48 stars - 27 forks
Ensembl/ensembl-compara
The Ensembl Compara Perl API and SQL schema
Perl - Apache-2.0 - Last pushed - 21 stars - 29 forks
rvosa/bio-phylo
Bio::Phylo - Phyloinformatic analysis using Perl
Perl - GPL-3.0 - Last pushed - 16 stars - 4 forks
sanger-pathogens/Bio-Tradis
A set of tools to analyse the output from TraDIS analyses
Perl - GPL-3.0 - Last pushed - 8 stars - 21 forks
sanger-pathogens/mlst_check
Multilocus sequence typing by blast using the schemes from PubMLST
Perl - GPL-3.0 - Last pushed - 7 stars - 12 forks
isovic/raptor
Graph-based mapping of long sequences, noisy or HiFi.
Perl - BSD-3-Clause-Clear - Last pushed - 41 stars - 3 forks
sanger-pathogens/assembly_improvement
Improve the quality of a denovo assembly by scaffolding and gap filling
Perl - GPL-3.0 - Last pushed - 29 stars - 18 forks
LyonsLab/coge
CoGe (Comparative Genomics) Platform
Perl - BSD-2-Clause - Last pushed - 23 stars - 10 forks
shenwei356/bio_scripts
Practical, reusable scripts for bioinformatics
Perl - MIT - Last pushed - 56 stars - 45 forks
tjparnell/biotoolbox
Tools for querying and analysis of genomic data
Perl - Artistic-2.0 - Last pushed - 20 stars - 13 forks
aleimba/bac-genomics-scripts
Collection of scripts for bacterial genomics
Perl - GPL-3.0 - Last pushed - 15 stars - 14 forks
bretonics/CHOMP
Search guide-RNA sequences given a genome or gene sequence
Perl - Other - Last pushed - 5 stars - 2 forks
MGEScan/mgescan
A Galaxy based system for identifying retrotransposons in genome
Perl - GPL-3.0 - Last pushed - 1 stars - 2 forks
erictleung/rosalind
traffic_light Programming Solutions to Bioinformatic Rosalind Problems
Perl - MIT - Last pushed - 0 stars - 1 forks
akotlar/bystro
Bystro genetic analysis (annotation, filtering, statistics)
Perl - Apache-2.0 - Last pushed - 14 stars - 2 forks
molbiodiv/bcgTree
Automatically calculate phylogenetic trees from bacterial core genes
Perl - MIT - Last pushed - 8 stars - 2 forks
jason-weirather/hla-polysolver
Fork of the Polysolver project
Perl - Other - Last pushed - 7 stars - 8 forks
bretonics/Bioinformatics-Software
Collection of open source Bioinformatics software and tools
Perl - Last pushed - 5 stars - 4 forks
linsalrob/partie
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and ...
Perl - MIT - Last pushed - 4 stars
molleraj/MetaCRAST
MetaCRAST: reference-guided CRISPR detection in metagenomes
Perl - GPL-3.0 - Last pushed - 2 stars
tjparnell/HCI-Scripts
Miscellaneous bioinformatics scripts written by me for myself and other people
Perl - Artistic-2.0 - Last pushed - 2 stars - 1 forks
Ensembl/Alien-LibBigWig
Alien build script for libBigWig
Perl - Apache-2.0 - Last pushed - 0 stars
DKFZ-ODCF/igv-crawler
Crawl any filesystem for genome data, provides one-click opening in IGV
Perl - MIT - Last pushed - 0 stars
pseudogene/genetic-mapper
SVG Genetic Map Drawer
Perl - Last pushed - 4 stars - 1 forks
robsyme/nf-repeatmasking
Nextflow workflow for automatic repeat detection, classification and masking
Perl - MIT - Last pushed - 4 stars - 3 forks
guigolab/ipsa-nf
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
Perl - GPL-3.0 - Last pushed - 2 stars - 1 forks
Childs-Lab/GC_specific_MAKER
perl and python
Perl - MIT - Last pushed - 2 stars - 2 forks
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