hms-dbmi/scde
R package for analyzing single-cell RNA-seq data
R - Other - Last pushed - 83 stars - 42 forks
benjjneb/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
R - LGPL-3.0 - Last pushed - 206 stars - 81 forks
ShixiangWang/sigminer
🌲 An easy-to-use and scalable toolkit for genomic alteration (mutational) signature analysis and ...
R - Other - Last pushed - 44 stars - 6 forks
timoast/signac
R toolkit for the analysis of single-cell chromatin data
R - Other - Last pushed - 35 stars - 6 forks
hbc/bcbioRNASeq
Quality control and differential expression for bcbio RNA-seq experiments.
R - MIT - Last pushed - 19 stars - 6 forks
PCRuniversum/RDML
RDML data import for R
R - Other - Last pushed - 13 stars - 5 forks
KamilSJaron/smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
R - Apache-2.0 - Last pushed - 67 stars - 5 forks
Bioconductor/GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
R - Last pushed - 41 stars - 15 forks
imminfo/tcr
[DEPRECATED] tcR: an R package for immune receptor repertoire advanced data analysis.
R - Last pushed - 29 stars - 19 forks
ropensci/UCSCXenaTools
packageAn R package for accessing genomics data from UCSC Xena platform, from cancer multi-omic...
R - GPL-3.0 - Last pushed - 27 stars - 6 forks
YuLab-SMU/GOSemSim
golfGO-terms Semantic Similarity Measures
R - Last pushed - 25 stars - 11 forks
lgatto/MSnbase
Base Classes and Functions for Mass Spectrometry and Proteomics
R - Last pushed - 24 stars - 18 forks
GreenleafLab/chromVAR
chromatin Variability Across Regions (of the genome!)
R - Other - Last pushed - 23 stars - 5 forks
dosorio/Peptides
An R package to calculate indices and theoretical physicochemical properties of peptides and prot...
R - Other - Last pushed - 23 stars - 9 forks
nanxstats/protr
Comprehensive toolkit for generating various numerical features of protein sequences
R - Other - Last pushed - 19 stars - 5 forks
sbg/sevenbridges-r
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
R - Apache-2.0 - Last pushed - 18 stars - 13 forks
nasqar/seuratv3wizard
A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data a...
R - GPL-3.0 - Last pushed - 17 stars - 4 forks
nanxstats/Rcpi
Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformat...
R - Artistic-2.0 - Last pushed - 15 stars - 6 forks
oganm/homologene
mouse left_right_arrow couple An r package that works as a wrapper to homologene
R - Other - Last pushed - 13 stars - 2 forks
BIONF/PhyloProfile
phylogenetic profile analysis tool
R - MIT - Last pushed - 12 stars - 3 forks
PavlidisLab/neuroexpresso
bar_chart Gene expression in neuroexpresso database
R - GPL-2.0 - Last pushed - 11 stars
adnaniazi/tailfindr
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
R - GPL-3.0 - Last pushed - 11 stars - 5 forks
hbc/bcbioSingleCell
Import and analyze bcbio single-cell RNA-seq data.
R - MIT - Last pushed - 10 stars - 3 forks
USCbiostats/slurmR
slurmR: A Lightweight Wrapper for Slurm
R - Other - Last pushed - 10 stars - 1 forks
gitter-lab/LPWC
Lag Penalized Weighted Correlation for Time Series Clustering
R - Other - Last pushed - 7 stars - 2 forks
facileverse/FacileAnalysis
Modular & interactive analysis modules for bioinformatics
R - Apache-2.0 - Last pushed - 5 stars - 1 forks
llrs/BioCor
Package to calculate functional similarity between genes
R - GPL-3.0 - Last pushed - 5 stars
varemo/piano
piano - An R/Bioconductor package for gene set analysis
R - Last pushed - 4 stars
mikelove/bioc-refcard
Bioconductor cheat sheet
R - Last pushed - 94 stars - 48 forks
Oshlack/splatter
Simple simulation of single-cell RNA sequencing data
R - GPL-3.0 - Last pushed - 75 stars - 29 forks
License
Keyword
Language
Host

Subscribe to an RSS feed of this search