hms-dbmi/scde
R package for analyzing single-cell RNA-seq data
R - Other - Last pushed - 83 stars - 42 forks
benjjneb/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
R - LGPL-3.0 - Last pushed - 103 stars - 38 forks
hbc/bcbioRNASeq
Quality control and differential expression for bcbio RNA-seq experiments.
R - MIT - Last pushed - 19 stars - 6 forks
kablag/RDML
RDML data import for R
R - Other - Last pushed - 14 stars - 4 forks
Bioconductor/GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
R - Last pushed - 41 stars - 15 forks
imminfo/tcr
[DEPRECATED] tcR: an R package for immune receptor repertoire advanced data analysis.
R - Last pushed - 29 stars - 19 forks
lgatto/MSnbase
Base Classes and Functions for Mass Spectrometry and Proteomics
R - Last pushed - 24 stars - 18 forks
GreenleafLab/chromVAR
chromatin Variability Across Regions (of the genome!)
R - Other - Last pushed - 23 stars - 5 forks
nanxstats/protr
Comprehensive toolkit for generating various numerical features of protein sequences
R - Other - Last pushed - 19 stars - 5 forks
sbg/sevenbridges-r
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
R - Apache-2.0 - Last pushed - 18 stars - 13 forks
oganm/homologene
mouse left_right_arrow couple An r package that works as a wrapper to homologene
R - Other - Last pushed - 13 stars - 2 forks
BIONF/PhyloProfile
phylogenetic profile analysis tool
R - MIT - Last pushed - 12 stars - 3 forks
PavlidisLab/neuroexpresso
bar_chart Gene expression in neuroexpresso database
R - GPL-2.0 - Last pushed - 11 stars
hbc/bcbioSingleCell
Import and analyze bcbio single-cell RNA-seq data.
R - MIT - Last pushed - 10 stars - 3 forks
gitter-lab/LPWC
Lag Penalized Weighted Correlation for Time Series Clustering
R - Other - Last pushed - 7 stars - 2 forks
road2stat/Rcpi
Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformat...
R - Artistic-2.0 - Last pushed - 5 stars - 1 forks
llrs/BioCor
Package to calculate functional similarity between genes
R - GPL-3.0 - Last pushed - 5 stars
varemo/piano
piano - An R/Bioconductor package for gene set analysis
R - Last pushed - 4 stars
mikelove/bioc-refcard
Bioconductor cheat sheet
R - Last pushed - 94 stars - 48 forks
Oshlack/splatter
Simple simulation of single-cell RNA sequencing data
R - GPL-3.0 - Last pushed - 35 stars - 14 forks
JEFworks/liger
Lightweight Iterative Gene set Enrichment in R
R - GPL-3.0 - Last pushed - 22 stars - 5 forks
slowkow/proxysnps
bookmark Get SNP proxies from the 1000 Genomes Project.
R - MIT - Last pushed - 14 stars - 8 forks
bioconnector/workshops
Bioconnector Workshops
R - CC-BY-SA-4.0 - Last pushed - 13 stars - 18 forks
dosorio/Peptides
An R package to calculate indices and theoretical physicochemical properties of peptides and prot...
R - Other - Last pushed - 9 stars - 2 forks
Illumina/happyR
R tools to interact with hap.py output
R - BSD-3-Clause - Last pushed - 8 stars
yangjl/pseudoRef
Make Pseudo-Reference Genome from VCF/BCF
R - Last pushed - 7 stars
Illumina/happyCompare
Reporting toolbox for happy output
R - Other - Last pushed - 5 stars - 1 forks
greenelab/RNAseq_titration_results
R - BSD-3-Clause - Last pushed - 5 stars - 3 forks
NKI-CCB/ggsea
Flexible gene set enrichment analysis
R - Apache-2.0 - Last pushed - 4 stars
sjessa/chromswitch
An R/Bioconductor package for detecting chromatin state switches
R - Other - Last pushed - 2 stars - 1 forks
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