sanger-pathogens/Roary
Rapid large-scale prokaryote pan genome analysis
Perl - GPL-3.0 - Last pushed - 91 stars - 79 forks
LANL-Bioinformatics/EDGE
EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze an...
Perl - GPL-3.0 - Last pushed - 39 stars - 23 forks
sanger-pathogens/Bio-Tradis
A set of tools to analyse the output from TraDIS analyses
Perl - GPL-3.0 - Last pushed - 8 stars - 19 forks
sanger-pathogens/mlst_check
Multilocus sequence typing by blast using the schemes from PubMLST
Perl - GPL-3.0 - Last pushed - 7 stars - 12 forks
sanger-pathogens/assembly_improvement
Improve the quality of a denovo assembly by scaffolding and gap filling
Perl - GPL-3.0 - Last pushed - 29 stars - 18 forks
LyonsLab/coge
CoGe (Comparative Genomics) Platform
Perl - BSD-2-Clause - Last pushed - 23 stars - 10 forks
aleimba/bac-genomics-scripts
Collection of scripts for bacterial genomics
Perl - GPL-3.0 - Last pushed - 15 stars - 14 forks
dpastling/plethora
Copy number estimation of highly duplicated sequences
Perl - MIT - Last pushed - 6 stars - 1 forks
galantelab/sandy
A straightforward and complete next-generation sequencing read simulator
Perl - GPL-3.0 - Last pushed - 1 stars - 1 forks
etheleon/blast2lcaPlus
Python package and wrapper around MEGAN6 CE's blast2lca
Perl - MIT - Last pushed - 0 stars
akotlar/bystro
Bystro genetic analysis (annotation, filtering, statistics)
Perl - Apache-2.0 - Last pushed - 14 stars - 2 forks
vinuesa/get_phylomarkers
A pipeline to select optimal markers for microbial phylogenomics, population genetics and genomic...
Perl - GPL-3.0 - Last pushed - 5 stars - 2 forks
DKFZ-ODCF/igv-crawler
Crawl any filesystem for genome data, provides one-click opening in IGV
Perl - MIT - Last pushed - 0 stars
quadram-institute-bioscience/metable_project
Support material for the MSCA RISE "METABLE" project
Perl - GPL-3.0 - Last pushed - 0 stars
robsyme/nf-repeatmasking
Nextflow workflow for automatic repeat detection, classification and masking
Perl - MIT - Last pushed - 4 stars - 3 forks
guigolab/ipsa-nf
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
Perl - GPL-3.0 - Last pushed - 2 stars - 1 forks
Childs-Lab/GC_specific_MAKER
perl and python
Perl - MIT - Last pushed - 2 stars - 2 forks
yksmym/MCPC
Molecular Convergence Probability Calculator
Perl - GPL-3.0 - Last pushed - 1 stars
hsiaoyi0504/Assembly_Metrics_Toolkit
Simple toolkit for assembly metrics calculation.
Perl - Last pushed - 0 stars
jvolkening/bsclient
An interactive FTP-like command-line Illumina BaseSpace download client
Perl - GPL-3.0 - Last pushed - 0 stars
bioinfoplant/tRNAtools
Tools to analyze the tRNA gene content of genomes
Perl - Apache-2.0 - Last pushed - 0 stars
yjx1217/LRSDAY
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Perl - MIT - Last pushed - 4 stars
robinvanderlee/positive-selection
Scripts and procedures for detecting positively selected genes and codons in primates
Perl - Last pushed - 2 stars - 3 forks
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