multiqc
Create aggregate bioinformatics analysis reports across many samples and tools
Latest release 1.7 - Updated - 417 stars
ariba
ARIBA: Antibiotic Resistance Identification By Assembly
Latest release 2.13.3 - Updated - 51 stars
iva
Iterative Virus Assembler
Latest release 1.0.9 - Updated - 23 stars
checkQC
A simple program to parse Illumina NGS data and check it for quality criteria.
Latest release 3.3.0 - Updated - 19 stars
lineage
tools for genetic genealogy and the analysis of consumer DNA test results
Latest release 1.0.3 - Updated - 31 stars
metarna
Finds target sites for the miRNAs in genomic sequences.
Latest release 4.0.5 - Updated - 17 stars
epitopepredict
Python package for epitope prediction
Latest release 0.3.0 - Updated - 5 stars
umitools
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
Latest release 0.3.4 - Updated - 4 stars
rabifier
A bioinformatic classifier of Rab GTPases
Latest release 2.0.2 - Updated - 2 stars
targqc
Genome capture target coverage evaluation tool
Latest release 1.5.2 - Updated - 2 stars
pyensemblrest
An easy way to access EnsEMBL data with Python.
Latest release 0.2.3 - Updated - 22 stars
mitre
Microbiome Interpretable Temporal Rule Engine
Latest release 1.0b1 - Updated - 9 stars
tiptoft
tiptoft: predict which plasmid should be present from uncorrected long read data
Latest release 1.0.0 - Updated - 8 stars
NanoSim-H
Simulation of Oxford Nanopore reads. A fork of NanoSim.
Latest release 1.1.0.4 - Updated - 3 stars
medirect
multiprocessed ncbi edirect and ftract
Latest release 0.11.0 - Updated - 2 stars
sistr-cmd
Serovar predictions from Salmonella whole-genome sequence assemblies by determination of antigen ...
Latest release 1.0.2 - Updated - 1 stars
ngs_utils
Utils for NGS pipelines by Vlad Saveliev
Latest release 2.3.16 - Updated
solida
NGS pipelines bootstrapper
Latest release 0.9.1 - Updated
ymp
Flexible multi-omic pipeline system
Latest release 0.0.5 - Updated - 9 stars
plasmidpredictor
plasmidpredictor: predict which plasmid should be present from uncorrected long read data
Latest release 0.1.0 - Published - 8 stars
CharGer
Characterization of Germline variants
Latest release 0.5.2 - Updated - 4 stars
integron_finder
Integron Finder aims at detecting integrons in DNA sequences
Latest release 1.5.1 - Published - 3 stars
smallrnaseq
Package for short RNA-seq analysis
Latest release 0.4.0 - Updated - 2 stars
chunksub
Submit jobs in chunks on a qsub-based cluster. *Like `parallel` only for qsub*
Latest release 0.1.3 - Updated - 1 stars
ngs-toolkit
A toolkit for NGS analysis with Python.
Latest release 0.2.1 - Updated - 1 stars
metabolitics
metabolitics
Latest release 0.0.12 - Updated - 1 stars
pytfmpval
Python bindings for the TFM-Pvalue program.
Latest release 0.2.1 - Updated
bio_pype
Management and development framework for bioinformatics pipelines
Latest release 1.0.1 - Updated
metagenomics-focus
FOCUS: An Agile Profiler for Metagenomic Data
Latest release 1.4 - Updated - 1 stars
Orange-Bioinformatics
Orange Bioinformatics add-on for Orange data mining software package.
Latest release 2.6.25 - Updated
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