multiqc
Create aggregate bioinformatics analysis reports across many samples and tools
Latest release 1.6 - Updated - 375 stars
checkQC
A simple program to parse Illumina NGS data and check it for quality criteria.
Latest release 2.0.1 - Updated - 18 stars
lineage
tools for genetic genealogy and the analysis of consumer DNA test results
Latest release 1.0.1 - Updated - 26 stars
metarna
Finds target sites for the miRNAs in genomic sequences.
Latest release 4.0.5 - Updated - 17 stars
iterativeWGCNA
Iterative application of WGCNA
Latest release 1.1.6 - Updated - 10 stars
integron_finder
Integron Finder aims at detecting integrons in DNA sequences
Latest release 1.5.1 - Published - 3 stars
targqc
Genome capture target coverage evaluation tool
Latest release 1.5.2 - Updated - 2 stars
rabifier
A bioinformatic classifier of Rab GTPases
Latest release 2.0.2 - Updated - 2 stars
pyensemblrest
An easy way to access EnsEMBL data with Python.
Latest release 0.2.3 - Updated - 22 stars
molbiox
utilities for bioinformatics
Latest release 0.0.13 - Updated - 5 stars
medirect
multiprocessed ncbi edirect and ftract
Latest release 0.9.0 - Updated - 1 stars
sistr-cmd
Serovar predictions from Salmonella whole-genome sequence assemblies by determination of antigen ...
Latest release 1.0.2 - Updated - 1 stars
solida
NGS pipelines bootstrapper
Latest release 0.8.3 - Updated
ngs_utils
Utils for NGS pipelines by Vlad Saveliev
Latest release 1.2.2 - Updated
epitopepredict
Python package for epitope prediction
Latest release 0.3.0 - Updated - 5 stars
CharGer
Characterization of Germline variants
Latest release 0.5.2 - Updated - 4 stars
chunksub
Submit jobs in chunks on a qsub-based cluster. *Like `parallel` only for qsub*
Latest release 0.1.3 - Updated - 1 stars
metabolitics
metabolitics
Latest release 0.0.12 - Updated - 1 stars
smallrnaseq
Package for short RNA-seq analysis
Latest release 0.4.0 - Updated - 1 stars
pergenie
perGENIE is a Web/CUI application for personal genome interpretation.
Latest release 0.1.4 - Updated - 1 stars
pytfmpval
Python bindings for the TFM-Pvalue program.
Latest release 0.2.1 - Updated
disembl
A refactoring/reimplementation of DisEMBL
Latest release 2.0rc0 - Published
FQTool
Tool to parse and filter FASTQ files
Latest release 1.4 - Updated
bio_pype
Management and development framework for bioinformatics pipelines
Latest release 1.0.1 - Updated
PyDAIR
Python library for diversity analysis of immune repertoire
Latest release 0.1.14 - Updated - 3 stars
rrat
Ribosomal RNA Allele Tree
Latest release 0.6 - Updated
Orange-Bioinformatics
Orange Bioinformatics add-on for Orange data mining software package.
Latest release 2.6.24 - Updated
ngs-toolkit
A toolkit for NGS analysis with Python.
Latest release 0.1.4 - Updated
umitools
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
Latest release 0.3.4 - Updated - 4 stars
MetaLocGramN
MetaLocGramN: a method for subcellular localization prediction of Gram-negative proteins.
Latest release 0.99 - Published