hgvs
HGVS Parser, Formatter, Mapper, Validator
Latest release 1.5.1 - Updated - 115 stars
pileup
JavaScript track viewer
Latest release 0.7.0 - Updated - 250 stars
pyfastx
pyfastx is a python module for fast random access to sequences from plain and gzipped FASTA/Q file
Latest release 0.8.2 - Updated - 52 stars
org.broadinstitute:gatk
Development on GATK 4
Latest release 4.2.0.0 - Updated - 1K stars
org.broadinstitute:gatk-test-utils
Development on GATK 4
Latest release 4.2.0.0 - Updated - 1K stars
pyGeno
A python package for Personalized Genomics and Proteomics
Latest release 2.0.0 - Updated - 236 stars
biomartr
Genomic Data Retrieval
Latest release 0.9.2 - Updated - 115 stars
edge-genome
Genome Engineering Tool
Latest release 2.18.0 - Updated - 23 stars
genomepy
Automatic downloading and processing of genomes and metadata in command line and Python
Latest release 0.9.3 - Updated - 205 stars
variant-spark
VariantSpark Python API
Latest release 0.4.0a0.dev0 - Updated - 97 stars
buddysuite
BuddySuite is a collection of command line utilities written in Python for working with biologica...
Latest release 1.3.0 - Updated - 71 stars
interop
The Illumina InterOp libraries are a set of common routines used for reading InterOp metric files...
Latest release 9.9.2 - Updated - 58 stars
valr
Genome Interval Arithmetic in R
Latest release 0.5.0 - Updated - 40 stars
PhiSpy
Prophage finder using multiple metrics
Latest release 4.2.6 - Updated - 21 stars
tnseq-transit
TRANSIT is a tool for the analysis of Tn-Seq data. It provides an easy to use graphical interface...
Latest release 3.2.1 - Updated - 9 stars
tnt.genome
Minimal genome browser based on TnT Board and Ensembl data
Latest release 0.1.10 - Updated - 6 stars
genomaps
Interactive visualization of high-density SNP, QTL, GWAS and gene data
Latest release 1.0.3 - Updated - 1 stars
ont-tombo
Analysis of raw nanopore sequencing data.
Latest release 1.5.1 - Updated - 131 stars
au.csiro.aehrc.variant-spark:variant-spark_2.11
Genomic variants interpretation toolkit
Latest release 0.2.0-a1 - Updated - 97 stars
pyani
pyani provides a package and script for calculation of genome-scale average nucleotide identity.
Latest release 0.2.10 - Updated - 95 stars
varify
Clinical DNA Sequencing Analysis and Data Discovery
Latest release 0.8.0 - Updated - 22 stars
plasflow
PlasFlow - predicting plasmid sequences in metagenomic data
Latest release 1.1.0 - Updated - 21 stars
perf-ssr
PERF is an exhaustive repeat finder
Latest release 0.4.6 - Updated - 14 stars
microbeannotator
A user friendly microbe genome annotation tool
Latest release 1.0.4 - Updated - 13 stars
reciprocal_smallest_distance
Reciprocal Smallest Distance (RSD) finds pairwise orthologous genes using global sequence alignme...
Latest release 1.1.7 - Updated - 11 stars
beditor
A computational workflow for designing libraries of guide RNAs for CRISPR base editing
Latest release 1.1.9 - Updated - 7 stars
amplicov
script to generate amplicon coverage plot
Latest release 0.2.0 - Updated - 6 stars
pyrodigal
Python interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.
Latest release 0.4.6 - Updated - 4 stars
vdw
Models and loader for processing, storing, and querying genetic data
Latest release 0.4.1 - Updated - 4 stars
intronIC
Retrieve annotated intron sequences and classify them as minor (U12-type) or major (U2-type)
Latest release 1.2.2 - Updated - 2 stars
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