emperor
Emperor
Latest release 1.0.3 - Updated - 51 stars
vsearch
Versatile open-source tool for microbiome analysis
Latest release 2.15.2 - Published - 442 stars
amptk
AMPtk: amplicon tool kit
Latest release 1.5.3 - Updated - 28 stars
empress
Fast and scalable phylogenetic tree viewer for multi-omic data analysis
Latest release 1.2.0 - Updated - 23 stars
qiita-spots
Qiita: Spot Patterns
Latest release 0.2.0 - Updated - 96 stars
ubiome
uBiome core taxonomy library
Latest release 0.8.0 - Updated - 64 stars
github.com/will-rowe/hulk
Histosketching Using Little Kmers
Latest release 0.1.2 - Published - 40 stars
micom
Microbial community modeling based on cobrapy.
Latest release 0.25.1 - Updated - 35 stars
calour-dev
CALOUR: exploratory and interactive microbiome analyses based on heatmap
Latest release 2019.5.1 - Published - 20 stars
calour
CALOUR: exploratory and interactive microbiome analyses based on heatmap
Latest release 2018.5.1 - Updated - 20 stars
redbiom
UNKNOWN
Latest release 0.3.5 - Updated - 17 stars
qiime-tools
Useful additions to the QIIME analysis pipeline including tools for data visualization and cluste...
Latest release 1.1.2 - Updated - 11 stars
q2-micom
QIIME 2 plugin for metabolic modeling of microbial communities.
Latest release 0.12.0 - Updated - 9 stars
nmdc-schema
Schema resources for the National Microbiome Data Collaborative (NMDC)
Latest release 2021.9.21rc1 - Updated - 4 stars
Miscoto
Microbiome Screening and COmmunity selection using TOpology
Latest release 3.1.1 - Updated - 3 stars
MetaLonDA
Metagenomics Longitudinal Differential Abundance Method
Latest release 1.1.8 - Updated - 2 stars
dbbact-calour
dbbact-calour is a Calour (https://github.com/biocore/calour) interface for dbBact (dbbact.org)
Latest release 1.11.0 - Updated - 1 stars
qurro
Qurro generates interactive visualizations of feature rankings (defined as some sortable measure ...
Latest release 0.7.1 - Updated - 19 stars
panphlan
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition and *i...
Latest release 1.3 - Updated - 19 stars
qurro
Visualizes differentially ranked features and log-ratios of their sample abundances
Latest release 0.7.1 - Updated - 19 stars
phylotoast
Tools for phylogenetic data analysis including visualization and cluster-computing support.
Latest release 1.3.0 - Published - 11 stars
superfocus
SUPER-FOCUS: A tool for agile functional analysis of shotgun metagenomic data
Latest release 0.35 - Updated - 10 stars
birdman
Framework for differential microbiome abundance using Bayesian inference
Latest release 0.0.4 - Updated - 7 stars
micone
The Microbial Co-occurrence Network Explorer
Latest release 0.7.1 - Updated - 4 stars
AMON-bio
Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins f...
Latest release 1.0.0 - Updated - 2 stars
global-data-manager
Save project-global variables in one location, manage and access them anywhere
Latest release 0.0.1 - Updated
mitre
Microbiome Interpretable Temporal Rule Engine
Latest release 1.0b1 - Updated - 9 stars
famli
Functional Analysis of Metagenomes by Likelihood Inferrence
Latest release 1.2 - Updated - 8 stars
vica
find highly divergent DNA and RNA viruses in microbiomes
Latest release 0.1.5 - Updated - 1 stars
math.npm
Simple mathematics Node.js package
Latest release 1.0.0 - Published
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