bionode-ncbi
Node.js module for working with the NCBI API (aka e-utils) using Streams.
Latest release 2.0.1 - Updated - 60 stars
ncbi-genome-download
Download genome files from the NCBI FTP server.
Latest release 0.3.0 - Updated - 476 stars
node-ncbi
Access and parse the NCBI eUtils API in Node or the Browser
Latest release 0.7.0 - Updated - 6 stars
genomepy
Automatic downloading and processing of genomes and metadata in command line and Python
Latest release 0.9.3 - Updated - 205 stars
icn3d
iCn3D Structure Viewer
Latest release 3.1.2 - Updated - 75 stars
eutils
"Python interface to NCBI's eutilities API"
Latest release 0.6.0 - Updated - 33 stars
multitax
Python package to obtain, parse and explore biological taxonomies
Latest release 1.1.0 - Updated - 17 stars
apostrophe-pubmed-import
Import PubMed docs from a Google Spreadsheet via an additional Manager interface on a piece subclass
Latest release 1.0.9 - Updated
ncbitax2lin
A tool that converts NCBI taxonomy dump into lineages
Latest release 2.0.2.dev0 - Updated - 67 stars
taxadb
locally query the ncbi taxonomy
Latest release 0.12.0 - Updated - 12 stars
geoDL
Dowload FASTQ files from GEO-NCBI with ease.
Latest release 1.0b21 - Updated - 7 stars
easy-entrez
Python REST API for Entrez E-Utilities: stateless, easy to use, reliable.
Latest release 0.2.2 - Updated - 4 stars
medirect
multiprocessed ncbi edirect and ftract
Latest release 0.18.0 - Updated - 4 stars
ncbi-api
The National Center for Biotechnology Information
Latest release 1.0.0 - Updated - 2 stars
GCModeller.Core
The common database reader includes: NCBI genbank reader NCBI gff/PTT feature sites document read...
Latest release 1.0.12 - Updated - 2 stars
pypubmed
Toolkits for NCBI Pubmed
Latest release 1.0.15 - Updated - 2 stars
ncbi-sequence-retriever
A light weighted tool to retrieve protein or nucleotide sequences based on list of ACCESSION ids ...
Latest release 1.1.2 - Updated
HF
A light-weight pipeline for searching and assembling homologous genes utilizing the NCBI SRA data...
Latest release 1.1.0 - Updated
global-data-manager
Save project-global variables in one location, manage and access them anywhere
Latest release 0.0.1 - Updated
cugr/bioscraper
php web wrappers for scraping free public biology database
Latest release 1.1.2 - Updated
pubmed2
search pubmeds quickly
Latest release 1.0.3 - Updated - 3 stars
entrez-rs
Rust wrapper for the Entrez API
Latest release 0.1.2-alpha - Updated - 3 stars
ncfp
ncfp is a script and module that facilitates recovery of nucleotide sequences from NCBI encoding ...
Latest release 0.2.0 - Updated - 2 stars
titugeorge/pubmed
API Wrapper to fetch PubMed article(s) with id(s) or by author name(s)
Latest release v1.0.0 - Published - 1 stars
math.npm
Simple mathematics Node.js package
Latest release 1.0.0 - Published
fastax
Make phylogenetic trees and lineages from the NCBI Taxonomy database
Latest release 1.4.0 - Updated
GetIsolationSources
Retrieves isolation sources from NCBI given the set of sequences with specified accession numbers...
Latest release 1.5.2 - Updated
metatools-ncbi
Download biosample and SRA runinfo metadata from NCBI
Latest release 0.2.1 - Updated
taxonomy-ranks
To get taxonomy ranks information with ETE3 from NCBI Taxonomy database.
Latest release 0.0.10 - Updated
fis-parser-type-script
A parser plugin for fis to compile typescript.
Latest release 0.0.4 - Updated
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