protvista-proteomics-adapter
A dataloader and parser (ProtVista compliant) for proteomics/peptide data imported in UniProt
Latest release 3.2.14 - Updated - 42 stars
pyGeno
A python package for Personalized Genomics and Proteomics
Latest release 2.0.0 - Updated - 236 stars
cptac
Python packaging for CPTAC data
Latest release 0.9.6 - Updated - 36 stars
geckopy
Methods for using the GECKO model with cobrapy
Latest release 2.0.2 - Updated - 25 stars
PTXQC
Quality Report Generation for MaxQuant and mzTab Results
Latest release 1.0.10 - Updated - 22 stars
r-ptxqc
A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
Latest release 1.0.10 - Updated - 22 stars
pyprophet
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
Latest release 2.1.10 - Updated - 18 stars
pypdb
A Python wrapper for the RCSB Protein Data Bank (PDB) API
Latest release 2.0 - Updated - 139 stars
pypdb
A Python API for the RCSB Protein Data Bank (PDB)
Latest release 2.0 - Updated - 139 stars
ProtVista
Protein feature viewer (uniprot annotation, variants, proteomics, ...)
Latest release 2.0.13 - Updated - 36 stars
OmicsIntegrator
Prize-Collecting Steiner Forests for Interactomes
Latest release 2.3.10 - Updated - 8 stars
MAGINE
Package to analyze biological data.
Latest release 0.1.5 - Updated - 6 stars
TopDownProteomics
Package Description
Latest release 0.0.285 - Updated - 4 stars
alphatims
A Python package to index Bruker TimsTOF raw data for fast and easy accession and visualization
Latest release 0.2.8 - Updated - 13 stars
photon_ptm
PHOsphoproteomic dissecTiOn via Networks
Latest release 0.3.0 - Updated - 10 stars
generator-biojs-webcomponents
Generate the scaffold for a BioJS component automatically so you don't have to do it yourself
Latest release 2.1.0 - Updated - 7 stars
dart-id
RT Alignment and Peptide ID Confidence Updating for LC-MS/MS Data
Latest release 2.0.7 - Updated - 7 stars
nmdc-schema
Schema resources for the National Microbiome Data Collaborative (NMDC)
Latest release 2021.7.1rc1 - Updated - 4 stars
sdrf-pipelines
Translate, convert SDRF to configuration pipelines
Latest release 0.0.18 - Updated - 3 stars
protmapper
Map protein sites to human reference sequence.
Latest release 0.0.22 - Updated - 2 stars
proms
Protein Markers Selection
Latest release 1.0.4 - Updated
mokapot
Fast and flexible semi-supervised learning for peptide detection
Latest release 0.7.3 - Updated - 13 stars
photon-ptm
PHOsphoproteomic dissecTiOn via Networks
Latest release 0.3.1 - Updated - 10 stars
ProteomIQon.PSMBasedQuantification
ProteomIQon.PSMBasedQuantification - computational proteomics
Latest release 0.0.5 - Updated - 9 stars
ProteomIQon.MzMLToMzLite
ProteomIQon.MzMLConverter - computational proteomics
Latest release 0.0.6 - Updated - 9 stars
ProteomIQon
ProteomIQon - computational proteomics
Latest release 0.0.5 - Updated - 9 stars
ProteomIQon.PeptideSpectrumMatching
ProteomIQon.PeptideSpectrumMatching - computational proteomics
Latest release 0.0.7 - Updated - 9 stars
ProteomIQon.PSMStatistics
ProteomIQon.PSMStatistics - computational proteomics
Latest release 0.0.6 - Updated - 9 stars
ProteomIQon.PeptideDB
ProteomIQon.PeptideDB - computational proteomics
Latest release 0.0.7 - Updated - 9 stars
ProteomIQon.ProteinInference
ProteomIQon.ProteinInference - computational proteomics
Latest release 0.0.7 - Updated - 9 stars
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