cobra
COBRApy is a package for constraint-based modeling of metabolic networks.
Latest release 0.22.1 - Updated - 287 stars
indra
Integrated Network and Dynamical Reasoning Assembler
Latest release 1.20.0 - Updated - 107 stars
org.sbml.jsbml:jsbml
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
amici
Advanced multi-language Interface to CVODES and IDAS
Latest release 0.11.18 - Updated - 58 stars
simplesbml
A simplified interface for constructing and accessing SBML docs. Version 2.0
Latest release 2.2.0 - Updated - 7 stars
cobra
Constraint-based reconstruction and analysis (COBRA) methods are widely used for genome-scale mod...
Latest release 0.22.0 - Updated - 287 stars
memote
the genome-scale metabolic model test suite
Latest release 0.13.0 - Updated - 76 stars
org.sbml.jsbml.ext:jsbml-layout
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml.ext:jsbml-render
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml.ext:jsbml-arrays
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml.ext:jsbml-req
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml.ext:jsbml-comp
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml.ext:jsbml-fbc
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml.ext:jsbml-groups
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml:jsbml-parent
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml.ext:jsbml-distrib
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml.ext:jsbml-qual
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml.ext:jsbml-dyn
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml.modules:jsbml-tidy
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml.ext:ext
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml.modules:modules
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml.ext:jsbml-spatial
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
pyvipr
Widget to visualize PySB models in Jupyter Notebook
Latest release 1.0.4 - Updated - 20 stars
python-libsbml-experimental
LibSBML is an application programming interface library for reading, writing, manipulating and va...
Latest release 5.19.0 - Updated - 16 stars
org.sbml.jsbml:jsbml-core
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
org.sbml.jsbml.ext:jsbml-multi
JSBML is a community-driven project to create a free, open-source, pure Java library for reading,...
Latest release 1.5 - Updated - 32 stars
pyvipr
Dynamic and static visualizations of systems biology models written in SBML, BNGL, and PySB
Latest release 1.0.2 - Updated - 20 stars
petab
Parameter estimation tabular data
Latest release 0.1.19 - Updated - 6 stars
cbmpy
CBMPy (https://github.com/SystemsBioinformatics/cbmpy) is a platform for constraint based modelli...
Latest release 0.8.1 - Updated - 4 stars
biosimulators-test-suite
Tools for validating that biosimulation tools are consistent with the BioSimulators standards
Latest release 0.1.49 - Updated - 3 stars
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