The bycon
project implements a data hosting environment for genomic and pheno-clinical data aligned with the GA4GH Beacon data model. It provides a Beacon API for data query and retrieval but also has extended functionality with a focus on genomic copy number variation data. For a prominent implementation example showcasing bycon
features please see the Progenetix oncogenomic resource.
The underlying database system utilizes a MongoDB instance and a storage model following for te most part the GA4GH object model. Also, the bycon
project implements functions for the ingestion and management of genomic variants and phenoclinical data, and provides a fromnt end for the Beacon API as a statically compiled React project.
Documentation has been moved to bycon.progenetix.org
.
Due to the rapid code development it is recommended to keep following the Changes
page.
The installation is documented on the website
(and in the page's Markdown source here).