1. (Optional) Create Virtual Environments (Note: venv is available in Python 3.3 and later. You can also use virtualenv)

$ python3 -m venv my_env (will create a directory called my_env)

$ source my_env/bin/activate

2. Install CpGtools

$ pip install cpgtools

or

$ pip install git+https://github.com/liguowang/cpgtools.git

3. Upgrade

$ pip install cpgtools --upgrade

4. Uninstall

pip -y uninstall cpgtools

https://cpgtools.readthedocs.io/en/latest/