This repository contain code and basic tutorial for "HiC1Dmetrics"

(Feb 2024) Now h1d v0.2.8 support the user-difined juicertools. You can use your own version of juicer tool by the --juicertool parameter

HiC1Dmetrics was based on python3 and released on PyPI, it could be installed by

pip install h1d

After installation, try:

$ h1d -V
h1d version 0.1.0

For detailed usage, please refer to h1d Documents

Please click hic1d webapp

Wang J, Nakato R. HiC1Dmetrics: framework to extract various one-dimensional features from chromosome structure data. Briefings in Bioinformatics, bbab509,2021.