pyannotables
Python package for conversions between Ensembl IDs and gene names (annotables + pyranges + Ensembl GTF files)
- Free software: Apache Software License 2.0
Installation
- pip install pyannotables
Features
Building data frames
See ./build.ipynb.
Changelog
- v0.5: Homology mapping table and function (homology_convert) are added. tables is a function now.
- v0.4: Entrez and UNIPROT IDs are added.
- v0.3: Ensembl version updated to 100. NCBI transcript IDs, gene lengths and gene exon lengths are added.
Credits
- annotables package in R https://github.com/stephenturner/annotables
- audreyr/cookiecutter-pypackage: https://github.com/audreyr/cookiecutter-pypackage