Convert files of some tools to microtable object of microeco package
Install file2meco package from CRAN.
if(!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")
install.packages("file2meco", repos = BiocManager::repositories())Liu, C., Li, X., Mansoldo, F.R.P., An, J., Kou, Y., Zhang, X., Wang, J., Zeng, J., Vermelho, A.B., Yao, M., 2022. Microbial habitat specificity largely affects microbial co-occurrence patterns and functional profiles in wetland soils. Geoderma 418, 115866. https://doi.org/10.1016/j.geoderma.2022.115866
https://chiliubio.github.io/microeco_tutorial/file2meco-package.html
Currently supported tools for data conversion include:
QIIME, QIIME2, HUMAnN, MetaPhlAn, Kraken2/Bracken, Ncyc, R phyloseq package, PICRUSt2, Tax4Fun/Tax4Fun2, ViromeScan.
We welcome any contribution ! Any idea/suggestion will be considered. By participating in this project you agree to abide by the terms outlined in the Contributor Code of Conduct.
