ATACFragQC

The Python toolkits designed to control the fragment quality of Bulk/SingCell ATAC-seq.

Installation

python3 -m pip install --upgrade ATACFragQC

Usage

# Basic usage
ATACFragQC [options] -i <input.bam> -r <reference.gtf>

# For more information
ATACFragQC -h

Features

• The distrubution of fragments in chromosomes
• The distrubution of fragment lengths
• The distrubution of fragments around transcription start sites (TSSs)
• Other feature would be supported in the future ...

Overview