CAMIProfilingVisualization
A collection of tools to visualize CAMI profiling outputs
Installation
Use conda
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda create -c etetoolkit -y -n CAMIViz python=3.7 numpy ete3 seaborn pandas matplotlib biom-format
conda activate CAMIVizExample usage
python src/profile_to_plot.py -i data/prediction_multi.profile -g data/ground_truth_multi.profile -b test -s sample_0 genusThis should result in a plot that looks like:
