Temporal PHATE

Temporal PHATE (TPHATE) is a python package for learning robust manifold representations of timeseries data with high temporal autocorrelation. TPHATE does so with a dual-kernel approach, estimating the first view as an affinity matrix based on PHATE manifold geometry, and the second view as summarizing the transitional probability between two timepoints based on the autocorrelation of the signal. For more information, see our preprint.