Extraction of abbreviation-definition pairs

Version: 0.2.4

This is a Python3 implementation of the Schwartz-Hearst algorithm for identifying abbreviations and their corresponding definitions in free text[1].

The original implementation is in Java, and Vincent Van Asch created a Python2 implementation at

http://www.cnts.ua.ac.be/~vincent/scripts/abbreviations.py

• NB: As of March 2019 this link appears to be dead.

I have simplified, refactored it for Python 3 and added some tests.

This version outputs a Python dictionary of abbreviation:definition pairs.

Installation for command-line use

pip install -r requirements.txt

Usage

From the command line

python abbreviations/schwartz_hearst.py <input file>

Installation as a module

python3 setup.py install

or

pip install abbreviations

Usage

from abbreviations import schwartz_hearst

# By default, the most recently encountered definition for each term is returned
pairs = schwartz_hearst.extract_abbreviation_definition_pairs(doc_text='The emergency room (ER) was busy')
pairs = schwartz_hearst.extract_abbreviation_definition_pairs(file_path='<path_to_file>')

# If multiple definitions are encountered for each term, you might want to return the most common for each
pairs = schwartz_hearst.extract_abbreviation_definition_pairs(doc_text='...', most_common_definition=True)

# ... or you might want to return the first encountered definition for each
pairs = schwartz_hearst.extract_abbreviation_definition_pairs(doc_text='...', first_definition=True)

[1] A. Schwartz and M. Hearst (2003) A Simple Algorithm for Identifying Abbreviations Definitions in Biomedical Text. Biocomputing, 451-462.