apifish

Toolbox for the analysis of smFISH images.


License
Other
Install
pip install apifish==0.6.4.dev0

Documentation

api-FISH

Installation

Dependencies

apiFISH requires Python XXX or newer. Additionally, it has the following dependencies:

  • numpy (>= 1.16.0)

  • scipy (>= 1.4.1)

  • scikit-learn (>= 0.21.0)

  • scikit-image (>= 0.14.2)

  • matplotlib (>= 3.0.2)

  • pandas (>= 0.24.0)

  • mrc (>= 0.1.5)

  • tensorflow (== 2.3.0)

  • tensorflow-addons (== 0.12.1)

Virtual environment

Usage

Support

Roadmap (suggestion)

Development

Source code

Contributing

Testing

Citation