asmc

The Ascertained Sequentially Markovian Coalescent and related tools


License
GPL-3.0
Install
pip install asmc==1.2

Documentation

FastSMC

⚠️ This repository is deprecated ⚠️

All FastSMC functionality can now be found in ASMC together with improvements and bug fixes.

This repository contains FastSMC development history, and v1.0 is the initial public release corresponding to this paper:

J. Nait Saada, G. Kalantzis, D. Shyr, F. Cooper, M. Robinson, A. Gusev, P. F. Palamara. Identity-by-descent detection across 487,409 British samples reveals fine-scale evolutionary history and trait associations. Nature Communications, 2020.

If you want to use this specific repository, please refer to the legacy readme.