Bacteria Documentation

This project was developed during my pre doctoral rotation at the Global regulation for bacterial adaptation supervised by Bianca Sclavi. This repository holds all the code and documentation developed during this time. A pipeline was developed to analyze image data using SuperSegger and Omnipose (Pipeline Documentation), a library to process this data, called Bacteria (Bacteria Documentation Site) and also the 3D modeling designs to fix the plate with PDMS to the centrifuge and distribute the bacteria in all channels of the microfluidic device (3D models folder).