biapol-utilities
Collection of utility functions from the BiA-PoL group at the DFG Cluster of Excellence "Physics of Life" (PoL) @ TU Dresden, Germany.
Usage
This library contains functions for comparing and visualizing label images. For example, comparing label images is as easy as this:
import biapol_utilities as biau
biau.label.compare_labels(ground_truth, segmented)
In another example, you can visualize a label image with a nice color map like this:
import biapol_utilities as biau
from skimage.io import imshow
imshow(label_image, cmap=biau.labels_colormap(), vmin=0, vmax=labels.max())
We provide examples to most of our functionality on our documentation. The examples are also available as jupyter notebooks.
Installation
biapol-utilities can be installed using pip:
pip install biapol-utilities
If you want to develop biapol-utilities you can download and install it like this:
git clone https://github.com/BiAPoL/biapol-utilities
cd biapol-utilities
pip install -e .
Ressources
Acknowledgements
Developing biapol-utilities is a community effort. We would like to thank everybody who helped developing and testing. Furthermore, we are gladly re-using code from other open source projects. See the the thirdparty-licenses folder for details.
