bidsschematools

Python tools for working with the BIDS schema.


Keywords
bids, data-standards, neuroimaging, standards
License
MIT
Install
pip install bidsschematools==0.9.0

Documentation

Validation CircleCI Mastodon Follow @BIDSstandard DOI

bids-logo

bids-logo

The Brain Imaging Data Structure (BIDS) is an emerging standard for the organization of neuroimaging data.

In this repository, we develop the BIDS specification.

When to use BIDS

To organize your data in BIDS, all you need is neuro data, a computer, and the BIDS specification.

BIDS currently supports the following data modalities with more to come in the future:

  • MRI
  • MEG
  • EEG
  • iEEG
  • behavioral
  • physiological
  • PET
  • microscopy
  • NIRS
  • motion

Formatting your data with BIDS

As a dataset curator, the GitHub repository and all files therein can be safely ignored. Users should focus on the rendered content. The specification is provided in the form of a webpage, built using MkDocs and Read the Docs.

Want to learn more about working with BIDS? Have a question, comment, or suggestion?

  1. Read some introductory material, most likely the very basic problems have already been addressed!
  1. Post your question in one of several channels where BIDS members are active

Contributing to BIDS

BIDS is a community-driven standard, and it depends on contributions from its members. We welcome new contributors, and we appreciate all contributions to the project!

For a current list of our contributors, please see our Contributors appendix.

When you're ready to get started, check out our contributing guidelines.

We ask that all contributions to BIDS across all project-related spaces (including but not limited to: GitHub, and the Google group; see BIDS communication channels) adhere to our code of conduct.

BIDS communication channels

Main communication channels

Social media channels

Contributors

Thanks goes to these wonderful people.

Aaron Oliver-Taylor
Aaron Oliver-Taylor
πŸ“–
Adam Li
Adam Li

πŸ“– πŸ’»
Adam Thomas
Adam Thomas

πŸ“–
Adeen Flinker
Adeen Flinker

πŸ“–
Adina S. Wagner
Adina S. Wagner

🎨 πŸ’»
Agah Karakuzu
Agah Karakuzu

πŸ’¬ πŸ“– πŸ”£ πŸ€” πŸ’»
Aki Nikolaidis
Aki Nikolaidis

πŸ“–
Alberto Lazari
Alberto Lazari
πŸ“–
Alejandro de la Vega
Alejandro de la Vega

πŸ› πŸ’» ⚠️
Alessio Giacomel
Alessio Giacomel

πŸ“–
Alex Rockhill
Alex Rockhill

πŸ“– πŸ”§ πŸ’»
Alexander Jones
Alexander Jones
πŸ’» πŸ›
Alexander L. Cohen
Alexander L. Cohen

πŸ› πŸ’» πŸ“– πŸ’¬
Alexander von Lautz
Alexander von Lautz
πŸ“–
Alexandre Gramfort
Alexandre Gramfort

πŸ“– πŸ’‘
Alexandre Hutton
Alexandre Hutton
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Alexandre Routier
Alexandre Routier

πŸ“–
Alexandru Foias
Alexandru Foias

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Ali Khan
Ali Khan
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Alizee Wickenheiser
Alizee Wickenheiser
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Ana Fouto
Ana Fouto
πŸ““
Anders Eklund
Anders Eklund

πŸ“– πŸ“’ πŸ’»
Andrea Pigorini
Andrea Pigorini
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Andrew Hoopes
Andrew Hoopes
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Andrew Jahn
Andrew Jahn
πŸ““
Andrew Janke
Andrew Janke

πŸ“– πŸ’»
Anibal SΓ³lon
Anibal SΓ³lon

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Anthony Galassi
Anthony Galassi

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Ariel Rokem
Ariel Rokem

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Arjen Stolk
Arjen Stolk
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Arnaud Delorme
Arnaud Delorme

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Arnaud Marcoux
Arnaud Marcoux

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Arshitha Basavaraj
Arshitha Basavaraj

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Ashley G. Gillman
Ashley G. Gillman

πŸ“–
Athanasia Monika Mowinckel
Athanasia Monika Mowinckel

πŸ“–
Aysegul Gunduz
Aysegul Gunduz
πŸ“–
Azeez Adebimpe
Azeez Adebimpe
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B. Nolan Nichols
B. Nolan Nichols
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Balint Kincses
Balint Kincses
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Benjamin Beasley
Benjamin Beasley

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Benjamin Dichter
Benjamin Dichter
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Benjamin Gagl
Benjamin Gagl
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Bertrand Thirion
Bertrand Thirion

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Bradley Voytek
Bradley Voytek

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Brett L. Foster
Brett L. Foster
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Brian A. Wandell
Brian A. Wandell
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Brian N. Lundstrom
Brian N. Lundstrom
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Camille Maumet
Camille Maumet

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Carlo Miniussi
Carlo Miniussi
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Cecile Madjar
Cecile Madjar
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ChloΓ© Pasturel
ChloΓ© Pasturel
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Chris Benjamin
Chris Benjamin
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Chris GahnstrΓΆm
Chris GahnstrΓΆm
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Chris Holdgraf
Chris Holdgraf

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Chris J. Gorgolewski
Chris J. Gorgolewski

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Chris Rorden
Chris Rorden

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Christian BΓΌchel
Christian BΓΌchel
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Christian Horea
Christian Horea

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Christine Rogers
Christine Rogers
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Christophe Phillips
Christophe Phillips

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Christopher J. Honey
Christopher J. Honey

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Christopher J. Markiewicz
Christopher J. Markiewicz

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Christopher Lee-Messer
Christopher Lee-Messer
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Clara Moreau
Clara Moreau
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Clint Hansen
Clint Hansen
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Cyril Pernet
Cyril Pernet

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Cyrus Eierud
Cyrus Eierud

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D. Sturgeon
D. Sturgeon

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Dan Levitas
Dan Levitas

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Dan Lurie
Dan Lurie

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Daniel A. Handwerker
Daniel A. Handwerker
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David Alsop
David Alsop
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David Boas
David Boas

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David Groppe
David Groppe

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David Keator
David Keator

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David McAlpine
David McAlpine
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David Thomas
David Thomas
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Dejan Draschkow
Dejan Draschkow
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Dianne Patterson
Dianne Patterson

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Dimitri Papadopoulos Orfanos
Dimitri Papadopoulos Orfanos

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Dmitry Petrov
Dmitry Petrov
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Dora Hermes
Dora Hermes

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Dorien Huijser
Dorien Huijser

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Douglas N. Greve
Douglas N. Greve

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Duncan Macleod
Duncan Macleod
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Dung Truong
Dung Truong

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Dylan Nielson
Dylan Nielson

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Eduard Ort
Eduard Ort

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Eleonora Marcantoni
Eleonora Marcantoni
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Elizabeth Bock
Elizabeth Bock
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Elizabeth DuPre
Elizabeth DuPre

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Elke Warmerdam
Elke Warmerdam
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Erdal Karaca
Erdal Karaca

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Eric A. Earl
Eric A. Earl

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Eric Achten
Eric Achten

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Eric Bridgeford
Eric Bridgeford
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Erin W. Dickie
Erin W. Dickie

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Ethan Blackwood
Ethan Blackwood
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Eugene P. Duff
Eugene P. Duff

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Ezequiel Mikulan
Ezequiel Mikulan
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Felipe Orihuela-Espina
Felipe Orihuela-Espina
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Fidel Alfaro Almagro
Fidel Alfaro Almagro
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Filip Szczepankiewicz
Filip Szczepankiewicz
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Filippo Maria Castelli
Filippo Maria Castelli

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Franco Pestilli
Franco Pestilli

πŸ“– πŸ’» 🎨 πŸ’‘ πŸ€” πŸ‘€ πŸ”§ πŸ“‹ πŸ” πŸš‡ πŸ“’
Franklin W. Feingold
Franklin W. Feingold

πŸ“‹ πŸ“ βœ… πŸ’¬ πŸ€” 🎨 πŸ“’ πŸ‘€ πŸš‡ πŸ–‹ πŸ“† πŸ’»
François Tadel
François Tadel
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Gaia Rizzo
Gaia Rizzo

πŸ“–
Gang Chen
Gang Chen

πŸ“–
GaΓ«l Varoquaux
GaΓ«l Varoquaux

πŸ“–
Ghislain Vaillant
Ghislain Vaillant

πŸ’»
Giacomo Bertazzoli
Giacomo Bertazzoli
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Giacomo Guidali
Giacomo Guidali
πŸ“–
Giacomo Mazzamuto
Giacomo Mazzamuto

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Gilles de Hollander
Gilles de Hollander

πŸ“–
Gio Piantoni
Gio Piantoni
πŸ“–
Gitte M. Knudsen
Gitte M. Knudsen
πŸ“–
Giulio Castegnaro
Giulio Castegnaro
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Giuseppe Gallitto
Giuseppe Gallitto
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Graham Searle
Graham Searle
πŸ“–
Granville J. Matheson
Granville J. Matheson

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Gregory Kiar
Gregory Kiar

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Gregory Noack
Gregory Noack

πŸ“– πŸ’» ⚠️
Greydon Gilmore
Greydon Gilmore

πŸ“– πŸ’»
Guillaume Flandin
Guillaume Flandin

πŸ“– πŸ’»
Gunnar Schaefer
Gunnar Schaefer
πŸ“–
Gustav Nilsonne
Gustav Nilsonne

πŸ“–
Hamish Innes-Brown
Hamish Innes-Brown
πŸ“–
Hanne D. Hansen
Hanne D. Hansen
πŸ“–
Hanzhang Lu
Hanzhang Lu
πŸ“–
Hao-Ting Wang
Hao-Ting Wang

πŸ“– πŸ›
Helena Cockx
Helena Cockx

πŸ“– πŸ€” πŸ’¬
Henk Mutsaerts
Henk Mutsaerts

πŸ’¬ πŸ› πŸ’» πŸ“– πŸ’‘ πŸ“‹ πŸ€” πŸ“† πŸ“’ πŸ““
Hernando Ombao
Hernando Ombao
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Hugo Boniface
Hugo Boniface

πŸ“– πŸ’»
Ilkay Isik
Ilkay Isik

πŸ“–
Ilona Lipp
Ilona Lipp

πŸ“–
International Neuroinformatics Coordinating Facility
International Neuroinformatics Coordinating Facility

πŸ’΅ πŸ“‹
Iris Groen
Iris Groen

πŸ“–
Isla Staden
Isla Staden
πŸ“–
Jaap von der Aar
Jaap von der Aar
πŸ“–
Jakub Kaczmarzyk
Jakub Kaczmarzyk

πŸ“– πŸ”§ πŸš‡
James Gholam
James Gholam
πŸ“–
James Kent
James Kent

πŸ’¬ πŸ’»
Jan Mathijs Schoffelen
Jan Mathijs Schoffelen

πŸ“–
Jan Petr
Jan Petr

πŸ’¬ πŸ› πŸ’» πŸ“– πŸ”£ πŸ’‘ πŸ“‹ πŸ€” πŸ“† ⚠️ πŸ“’
Jan-Mathijs Schoffelen
Jan-Mathijs Schoffelen
πŸ“–
Jean-Baptiste Poline
Jean-Baptiste Poline

πŸ“– πŸ“’ πŸ€” 🎨 πŸ’»
Jean-Christophe Houde
Jean-Christophe Houde

πŸ“– πŸ’»
Jean-Dominique Gallezot
Jean-Dominique Gallezot
πŸ“–
Jean-Philippe Lachaux
Jean-Philippe Lachaux
πŸ“–
Jeanette Mumford
Jeanette Mumford

πŸ“–
Jefferson Casimir
Jefferson Casimir
πŸ”§
Jeffrey G. Ojemann
Jeffrey G. Ojemann
πŸ“–
Jeffrey S. Grethe
Jeffrey S. Grethe

πŸ’¬ πŸ› βœ… πŸ“’ πŸ’»
JegouA
JegouA

πŸ’»
Jelle Dalenberg
Jelle Dalenberg

πŸ“–
Jeremy Moreau
Jeremy Moreau
πŸ“– πŸ’‘
Jessica A. Turner
Jessica A. Turner
πŸ“–
Jochem Rieger
Jochem Rieger

πŸ“–
John Detre
John Detre
πŸ“–
John Pellman
John Pellman
πŸ“–
John T. Wodder
John T. Wodder

πŸ’»
Joke Durnez
Joke Durnez

πŸ“– πŸ”§ πŸ’»
Jon Haitz Legarreta GorroΓ±o
Jon Haitz Legarreta GorroΓ±o

πŸ’» πŸ“–
Jonathan C. Lau
Jonathan C. Lau
πŸ“–
Jonathan Winawer
Jonathan Winawer

πŸ“–
Joost Kuijer
Joost Kuijer

πŸ“–
Jose Manuel Saborit
Jose Manuel Saborit
πŸ“–
Joseph Wexler
Joseph Wexler
πŸ“– πŸ’‘
Joseph Woods
Joseph Woods

πŸ“–
Julia Guiomar Niso GalΓ‘n
Julia Guiomar Niso GalΓ‘n

πŸ€” 🎨 πŸ” πŸ‘€ πŸ“‹ πŸ“ πŸ”§ πŸ› πŸ’» πŸ”£ βœ… πŸ’¬ πŸ“– πŸ’‘ πŸ“’
Julia Sprenger
Julia Sprenger

πŸ“–
Julien Cohen-Adad
Julien Cohen-Adad

πŸ“– πŸ”£ πŸ€”
Julius Welzel
Julius Welzel

πŸ“– πŸ’‘ πŸ› πŸ’» πŸ”£ πŸ€” πŸ’¬ πŸ““
Kai J. Miller
Kai J. Miller
πŸ“–
Kangjoo Lee
Kangjoo Lee

πŸ“–
Katja Heuer
Katja Heuer

πŸ”§
Kay Robbins
Kay Robbins

πŸ’» πŸ“– πŸ›
Kevin Larcher
Kevin Larcher
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Kimberly Ray
Kimberly Ray
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Kirstie Whitaker
Kirstie Whitaker

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Klara Gregorova
Klara Gregorova

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Klaus Gramann
Klaus Gramann
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Kris Thielemans
Kris Thielemans

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Kristofer Bouchard
Kristofer Bouchard

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Kurt Schilling
Kurt Schilling

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Laetitia Fesselier
Laetitia Fesselier
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Laura and John Arnold Foundation
Laura and John Arnold Foundation
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Leandro Beltrachini
Leandro Beltrachini
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Lee Kamentsky
Lee Kamentsky

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Lennart Walger
Lennart Walger
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Lennart Wittkuhn
Lennart Wittkuhn

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Liberty Hamilton
Liberty Hamilton

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Luca Pollonini
Luca Pollonini

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Luis Hernandez-Garcia
Luis Hernandez-Garcia
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Luke J. Edwards
Luke J. Edwards
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Lyuba Zehl
Lyuba Zehl

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Mainak Jas
Mainak Jas

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Manjari Narayan
Manjari Narayan
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Manuel Mercier
Manuel Mercier
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Maqsood Yaqub
Maqsood Yaqub
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Marc Lalancette
Marc Lalancette

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Marco Castellaro
Marco Castellaro

πŸ’¬ πŸ› πŸ’» πŸ“– πŸ’‘ ⚠️ πŸ“’ πŸš‡
Maria de la Iglesia
Maria de la Iglesia

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Marie-Hélène Bourget
Marie-Hélène Bourget

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Mark Mikkelsen
Mark Mikkelsen

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Markus Morawski
Markus Morawski
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Marta Bortoletto
Marta Bortoletto
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Martin Craig
Martin Craig
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Martin Noergaard
Martin Noergaard

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Martin Szinte
Martin Szinte

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Martin Wilson
Martin Wilson
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Martina Bulgari
Martina Bulgari
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Mateusz Pawlik
Mateusz Pawlik

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Mathias Goncalves
Mathias Goncalves

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Mathieu Boudreau
Mathieu Boudreau

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Matt Sanderson
Matt Sanderson
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Matteo Tonietto
Matteo Tonietto

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Matthias GΓΌnther
Matthias GΓΌnther
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Matthias Van Osch
Matthias Van Osch
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Maureen J Shader
Maureen J Shader
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Maurice Pasternak
Maurice Pasternak
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Max A. van den Boom
Max A. van den Boom

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Melanie Ganz-Benjaminsen

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Michael Chappell
Michael Chappell
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Michael Hanke
Michael Hanke

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Michael P. Harms
Michael P. Harms
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Michael P. Milham
Michael P. Milham
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Michael P. Notter
Michael P. Notter
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Michael Schirner
Michael Schirner

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MikaΓ«l Naveau
MikaΓ«l Naveau

πŸ›
Nader Pouratian
Nader Pouratian
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Natalia Petridou
Natalia Petridou
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National Institute of Mental Health
National Institute of Mental Health
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Nell Hardcastle
Nell Hardcastle

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Nicholas Traut
Nicholas Traut
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Nick F. Ramsey
Nick F. Ramsey
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Nicole C. Swann
Nicole C. Swann
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Nima Bigdely Shamlo
Nima Bigdely Shamlo
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Olivier David
Olivier David
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Orrin Devinsky
Orrin Devinsky
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Oscar Esteban
Oscar Esteban

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Pamela LaMontagne
Pamela LaMontagne
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Parul Sethi
Parul Sethi

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Patricia Clement
Patricia Clement

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Patrick Park
Patrick Park

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Paule-Joanne Toussaint
Paule-Joanne Toussaint
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Peer Herholz
Peer Herholz

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Petra Ritter
Petra Ritter

πŸ“–
Pierre Rioux
Pierre Rioux

πŸ“–
Pieter Vandemaele
Pieter Vandemaele

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Pradeep Reddy Raamana
Pradeep Reddy Raamana

πŸ’» πŸ”§
R. Cameron Craddock
R. Cameron Craddock

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Remi Gau
Remi Gau

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Richard HΓΆchenberger
Richard HΓΆchenberger

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Richard N. Henson
Richard N. Henson

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Robert B. Innis
Robert B. Innis

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Robert E. Smith
Robert E. Smith

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Robert Knight
Robert Knight
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Robert Luke
Robert Luke

πŸ’»
Robert Oostenveld
Robert Oostenveld

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Roberto Toro
Roberto Toro

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Rohan Goyal
Rohan Goyal
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Ross W. Blair
Ross W. Blair

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Russell A. Poldrack
Russell A. Poldrack

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RΓ©mi Adon
RΓ©mi Adon

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Samir Das
Samir Das

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Samuel Garcia
Samuel Garcia
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Samuel Nastase
Samuel Nastase

πŸ’»
Sara Elgayar
Sara Elgayar
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Sasha D'Ambrosio
Sasha D'Ambrosio
πŸ“–
Satrajit S. Ghosh
Satrajit S. Ghosh

πŸ“– πŸ’»
Scott Makeig
Scott Makeig

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Sein Jeung
Sein Jeung

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Shashank Bansal
Shashank Bansal
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Sjoerd B. Vos
Sjoerd B. Vos

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Soichi Hayashi
Soichi Hayashi

πŸ“– πŸ”§ πŸ›
Stefan Appelhoff
Stefan Appelhoff

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Stephan Bickel
Stephan Bickel
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Steven Meisler
Steven Meisler
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Suyash Bhogawar
Suyash Bhogawar

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Sylvain Baillet
Sylvain Baillet

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Sylvain Takerkart
Sylvain Takerkart

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SΓ©bastien Tourbier
SΓ©bastien Tourbier

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SΓΆren Grothkopp
SΓΆren Grothkopp
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Tal Pal Attia
Tal Pal Attia

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Tal Yarkoni
Tal Yarkoni

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Tamas Spisak
Tamas Spisak

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TamΓ‘s JΓ³zsa
TamΓ‘s JΓ³zsa
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Taylor Salo
Taylor Salo

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Teon L. Brooks
Teon L. Brooks

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Thomas E. Nichols
Thomas E. Nichols

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Thomas Funck
Thomas Funck

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Thomas Kirk
Thomas Kirk
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Thomas Okell
Thomas Okell
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Tibor Auer
Tibor Auer

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Timo Dickscheid
Timo Dickscheid

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Timotheus Berg
Timotheus Berg

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Tobey Betthauser
Tobey Betthauser
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Tobias Bengfort
Tobias Bengfort

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Tom Hampshire
Tom Hampshire
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Tor Wager
Tor Wager

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Travis Riddle
Travis Riddle
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Tristan Glatard
Tristan Glatard

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Tyler Collins
Tyler Collins
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Ulrike Bingel
Ulrike Bingel
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Vanessa Sochat
Vanessa Sochat

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Vasudev Raguram
Vasudev Raguram
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Vince D. Calhoun
Vince D. Calhoun

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Vittorio Iacovella
Vittorio Iacovella
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Vladimir Litvak
Vladimir Litvak
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Wietske van der Zwaag
Wietske van der Zwaag
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William Clarke
William Clarke
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William Triplett
William Triplett
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Wouter V. Potters
Wouter V. Potters

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Xiangrui Li
Xiangrui Li

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Yaroslav O. Halchenko
Yaroslav O. Halchenko

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Yoni Ashar
Yoni Ashar
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Yuan Wang
Yuan Wang
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Zachary Michael
Zachary Michael
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ezemikulan
ezemikulan

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josator2
josator2

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monkeyman192
monkeyman192

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Γ‰tienne Bergeron
Γ‰tienne Bergeron
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