Bio2BEL ADEPTUS

Converts ADEPTUS disease-differential gene expression signatures to BEL.

Big thanks to Daniel Himmelstein for preprocessing this data in his repository at: https://github.com/dhimmel/adeptus

Installation

bio2bel_adeptus can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_adeptus

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/adeptus.git

Setup

This repository does not currently cache the data, but only wraps conversion to BEL.

Python REPL

>>> import bio2bel_adeptus
>>> adeptus_manager = bio2bel_adeptus.Manager()
>>> graph = adeptus_manager.to_bel()