Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.


Keywords
Bioinformatics Workflows BioExcel Compatibility
License
Apache-2.0
Install
pip install biobb-io==3.0.0

Documentation

biobb_io

Introduction

Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: latest API documentation.

Version

v3.0.0 2020.1

Installation

Using PIP:

Using ANACONDA:

Using DOCKER:

  • Installation:

      docker pull quay.io/biocontainers/biobb_io:3.0.0--py_0
    
  • Usage:

      docker run quay.io/biocontainers/biobb_io:3.0.0--py_0 <command>
    

The command list and specification can be found at the Command Line documentation.

Using SINGULARITY:

MacOS users: it's strongly recommended to avoid Singularity and use Docker as containerization system.

  • Installation:

      singularity pull --name biobb_io.sif shub://bioexcel/biobb_io
    
  • Usage:

      singularity exec biobb_io.sif <command>
    

The command list and specification can be found at the Command Line documentation.

Copyright & Licensing

This software has been developed in the MMB group at the BSC & IRB for the European BioExcel, funded by the European Commission (EU H2020 823830, EU H2020 675728).

Licensed under the Apache License 2.0, see the file LICENSE for details.