Basic biological entities, coupled to public ontologies [`source <https://github.com/laminlabs/bionty/blob/main/bionty/models.py>`__].


License
Apache-2.0
Install
pip install bionty==1.3.2

Documentation

Stars pypi

bionty: Registries for basic biological entities, coupled to public ontologies

  • Access >20 public ontologies such as Gene, Protein, CellMarker, ExperimentalFactor, CellType, CellLine, Tissue, …
  • Create records from entries in public ontologies using .from_source().
  • Access full underlying public ontologies via .public() to search & bulk-create records.
  • Create in-house ontologies by extending public ontologies using hierarchical relationships among records (.parents).
  • Use .synonyms and .abbr to manage synonyms.
  • Safeguards against typos & duplications.
  • Ontology versioning via the bionty.Source registry.

Read the docs.