Biosimulations_Query

A python package to query the Biosimulations database

Current Release

https://pypi.org/project/biosimulations-query/

Installation

Prerequisites

Biosimulations_Query requires the following

• Python >= 3.5
• Pip

Configuration

The package assumes that you have an account with read and write access on the Biosimulations database. It searches your home directory for the "crbm.env" file containing your credentials.

At this time, the package cannot be used without database credentials. In the future, the package should support authentication through the your Biosimulations login.

Latest revision from GitHub

Run the following command to install the latest version from GitHub:

pip install git+https://github.com/reproducible-biomedical-modeling/biosimulations_query

Latest release From PyPI

Run the following command to install the latest release from PyPI:

pip install biosimulations_query[all]

Documentation

The latest documentation is avalable here

License

This package is released under the MIT license.

Dependencies

This package uses dependencies distributed under various licences. Please see the dependencies report for more information

Development team

This package was developed by the Karr Lab at the Icahn School of Medicine at Mount Sinai in New York as part of the Center for Reproducible Biomodeling Modeling.

• Bilal Shaikh

Funding

This package was developed with support from the National Institute for Bioimaging and Bioengineering (award P41EB023912).

Questions and comments

Please contact us or submit an issue with any questions or comments.