cleandat

Python functions to facilitate the pre-processing of data for ML tasks in a clinical context.


Keywords
clinical-data, clinical-trials, data-science, ehr, etl, etl-pipeline, maschine-learning, ml, pandas, pre-processing, python
License
MIT
Install
pip install cleandat==0.0.3

Documentation

CleanDat

Python functions to facilitate the pre-processing of data to prepare them for ML tasks, especially suitable for data in a clinical context.


Major functionalities include heuristic based data cleaning and feature engineering like:

  • Automatic detection of encoding strings (e.g. 1=m) and application of the corresponding encoding to un-encoded data of the corresponding column
  • Automatic detection of date strings of different formats (e.g. 2019-01-01, 01/01/2019, January 2022) and conversion to a unified format
  • Encoding of date strings into decomposed date features (e.g. year, month, day, weekday, etc.)
  • Heuristics for unification of different number formats, e.g. 1,000.00 vs. 1.000,00 or exponential notations like 1e3 vs 10x10^2
  • Detection and replacement of inconsistent data values

Setup

Install via pip:

pip install cleandat