convertFQ: Converting RNA to DNA | DNA to RNA in a fastq file
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This program is made to help you converting RNA to DNA | DNA to RNA in a fastq file.
Installation
Option 1
You can easily install this package using PyPI
$ pip install convertFQOption 2
Download the latest realese of convertFQ (convertFQ-1.0.tar.gz) in my Github repository. Then install it using pip
$ pip install convertFQ-1.0.tar.gzExample usage
1. Convert RNA to DNA
Converting U (uracil) with T (thymine)
$ convertFQ -i INPUT.fastq -c "rna2dna" -o OUTPUT2. Convert DNA to RNA
Converting T (thymine) with U (uracil)
$ convertFQ -i INPUT.fastq -c "dna2rna" -o OUTPUTCommand options
$ convertFQ --help
usage: convertFQ [-h] [-v] -i INPUT -c CONVERSION -o OUTPUT
convertFQ: RNA -> DNA | DNA -> RNA
optional arguments:
-h, --help show this help message and exit
-v, --version Print version and exit.
-i INPUT, --input INPUT
Input FASTQ [Required]
-c CONVERSION, --conversion CONVERSION
rna2dna | dna2rna [Required]
-o OUTPUT, --output OUTPUT
output name [Required]
