exoclasma-fastq

Description

exoclasma-fastq is a tool for conversion different types of files to Illumina-like FastQ, a part of upcoming ExoClasma Suite.

Features:

• Convert Juicer merged_nodups.txt file to FastQ, keeping its annotation
• Convert SRA to compressed FastQ via fastq-dump.

This is a pre-release. Use it at your own risk!

Installation

python3 -m pip install exoclasma-fastq

Command-line dependencies

• fastq-dump