genice2 4R -f svg[shadow:rotatex=2:rotatey=88] > 4R.svg
A GenIce2 plugin to illustrate the structure in SVG (and PNG) format.
version 2.4.1
- python^3.9
- numpy^1.26.4
- genice2>=2.2
- svgwrite>=1.4.3
- pillow*
% pip install genice2-svg% make installCopy the files in /formats/ into your local formats/ folder.
Usage:
% genice2 CS2 -r 3 3 3 -f svg[rotatex=30:shadow] > CS2.svg
Options:
rotatex=30
rotatey=30
rotatez=30
polygon Draw polygons instead of a ball and stick model.
arrows Draw the hydrogen bonds with arrows.
shadow=#8881 Draw shadows behind balls.
bg=#f00 Specify the background color.
O=0.06
H=0 Size of the hydrogen atom (relative to that of oxygen)
HB=0.4 Radius of HB relative to that of oxygem
OH=0.5 Radius of OH colvalent bond relative to that of oxygem
width=0 (Pixel)
height=0 (Pixel)
margin=0 (Pixel)
Png is a quick alternative for svg. Use png if making svg is too slow.
Usage:
% genice2 CS2 -r 3 3 3 -f png[shadow:bg=#f00] > CS2.png
Options:
rotatex=30
rotatey=30
rotatez=30
shadow Draw shadows behind balls.
bg=#f00 Specify the background color.
H=0 Size of the hydrogen atom (relative to that of oxygen)
O=0.06 Size of the oxygen atom in nm.
HB=0.4 Radius of HB relative to that of oxygen
OH=0.5 Radius of OH colvalent bond relative to that of oxygen
width=0 (Pixel)
height=0 (Pixel)
% make test
