geofetch

Downloads data and metadata from GEO and SRA and creates standard PEPs.


Keywords
project, bioinformatics, sequencing, ngs, workflow, GUI, download-manager, geo, metadata, sra, sra-data
License
BSD-3-Clause-Attribution
Install
pip install geofetch==0.6.0

Documentation

geofetch logo

Build Status PEP compatible

geofetch is a command-line tool that downloads sequencing data and metadata from GEO and SRA and creates standard PEPs. geofetch is hosted at pypi and documentation is hosted at geofetch.databio.org (source in the /docs folder).

You can convert the result of geofetch into bam files with the sra_convert pipeline.