Warning
A paper is in preparation about this work. If you consider to use this tool, please contact the author for attribution.
This Python library aims to be an abstraction layer for GFA file format.
Warning
The old version of gfagraphs has been deprecated (since v0.3.0), in favour of pgGraphs. Using gfagraphs or pgGraphs to import resolves now in using the same library. In a near future, pgGraphs namespace will be deprecated.
The package is organized in 4 modules:
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gfagraphs.abstractionscontains abstractions over GFA formats -
gfagraphs.gfaparsercontains an abstract class for parsing and saving GFA file format -
gfagraphs.graphcontains the mainGraphclass that represents a GFA graph in memory, and edit functions -
gfagraphs.networkxconains an abstract class for visualization and modelization of GFA in a NetworkX object
Note
Want to contribute? Feel free to open a PR on an issue about a missing, buggy or incomplete feature!
