hg19_genome

A package to work with hg19 genomic intervals.

Install

If you dont already have numpy and scipy installed, it is best to download Anaconda, a python distribution that has them included.

    https://continuum.io/downloads

Dependencies can be installed by:

    pip install -r requirements.txt

PyPI install, presuming you have all its requirements installed:

    pip install hg19_genome(not yet!!)

Usage

# ailist version: 0.1.7
from hg19_genome import Hg19Genome
genome = Hg19Genome()
genome.n_CpGs

genome.n_bases

genome.tss()

genome.tss(upstream=1000, downstream=1000)