Generate Highlighted SVG/PNG for KEGG Pathway

Installation

pip install kegg_viewer

Examples

kegg_viewer -h
kegg_viewer -p ko00196
kegg_viewer -p ko00196,ko00197
kegg_viewer -p path.list
kegg_viewer -p path.list -g gene.list -c ./cache -O output
kegg_viewer -p path.list -g gene.list -m online
kegg_viewer -p path.list -g gene.list -t png
kegg_viewer -p path.list -g gene.list -t both

genelist examples

K08913	red
K08912	blue
LAMA2	blue
K02289	red
K20713	blue
K08910	#FF1188

example results

png mode svg mode

SVG Mode:

• local # use local image as background
• online # use online image as background
• base64 # convert background to base64, default and recommend!

TODOs

• add list, link method for KEGGRest
• prepare cache data(png/conf) for input organism