kegg2svg

Simple Python package to convert KEGG HTML files to svg with the option to overlay quantitative data.

Installation

pip install kegg2svg

Use virtualenv, if you can! :)

If you start of the git repo, you can use

python setup.py .

Usage:

You will need the html from KEGG. You can get it e.g. via

curl "https://www.genome.jp/pathway/map01100" -o map01100.html

NOTE You MUST make sure to comply with the conditions of using KEGG http://www.kegg.jp/kegg/legal.html

Then you can convert the html to svg using:

kegg2svg map01100.html map01100.svg

Adding quant data

kegg2svg map01100.html map01100.svg -q example_data/metabolite_quants_example.csv

Please refer to the example_data files for the format. Only ID and value columns are required. Scaling of reaction paths is not implemented yet.