microarray-quantilenorm

Documentation

microarray-quantilenorm documentation

Description

This is an implementation of quantile normalization for microarray data analysis.

Usage

    python quantile_normalization CSV

microarray-quantilenorm will then do the following:

• Output a list of expression values for genes of interest in each sample to stdout.
• Create a PDF and PNG file graphing the distribution for each sample both before and after normalization.

Restrictions

1.) Each CSV file must contain the same gene set. 2.) Each gene must be unique.

Example:

> ABCD1 5.675
> ABCD2 3.456
> ABCD3 5.432

Requirements

Matplotlib >= 1.4.3

Numpy >= 1.9.2

Scipy >= 0.5.1

Installation

pip install microarray-quantilenorm