NPView
CLI tools for quickly viewing data in various formats (eventually). Currently only .npy and .csv/.tsv files are supported.
Installation
pip install npviewUsage
CSV
Results in a nicely-formatted and interactive view of the csv data with sidescrolling. Quit by pressing q. The number of rows and columsnare printed on exit.
csv {PATH_TO_YOUR_FILE.csv} 1 Unnamed: 0 PDB chain sequence interacting_residues >
2 181 181 5h9i A GPHMTGLAAISDALAADLAGLSFSSPVAHVYNPLLYAREPHVAYLSRFGSPPKEVLFVGMNPGPWGMAQTGVPFGEVAVVTEWLGINGTVTRPAGEHPKKRVDGFACRRSEVSGRRLWGFIRERFGTPERFFARFFVANYCPLLFLTAEGG>
3 19 19 1jdw A CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAP>
4 91 91 2irp A NVELFKKFSEKVEEIIEAGRILHSRGWVPATSGNISAKVSEEYIAITASGKHKGKLTPEDILLIDYEGRPVGGGKPSAETLLHTTVYKLFPEVNAVVHTHSPNATVISIVEKKDFVELEDYELLKAFPDIHTHEVKIKIPIFPNEQNIPLL>
5 28 28 1m8z A GRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCI>
6 97 97 2jpt A GSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMKELDEDGDGEVDFQEYVVLVAALTVACNNFFWENS >
7 125 125 3ew8 A LVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERI>
8 152 152 3sjz A AWPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE>
9 161 161 4ehs A SAPSLEFLEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQEKLDDPKLVALLLDANLPLKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKXICLKKARQAIXKLKQGELVAILE >
10 115 115 3bit A XEELNIDFDVFKKRIELLYSKYNEFEGSPNSLLFVLGSSNAENPYQKTTILHNWLLSYEFPATLIALVPGKVIIITSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKKLFDDVIALINSAGKTVGIPEKDSYQGKFXTEWNPVW>
11 164 164 4iu4 A KKMSIVLAPFSGGQPHSGVELGPDYLLKQGLQQDMEKLGWDTRLERVFDGKVVEARKASDNGDRIGRVKRPRLTAECTEKIYKCVRRVAEQGRFPLTIGGDHSIALGTVAGVLSVHPDAGVIWVDAHADINTMSGTVSGNLHGCPLSILLG>
Num Rows:
11 test.csv
Num Columns:
8
npp {PATH_TO_YOUR_FILE.npy}NumPY
npv {PATH_TO_YOUR_FILE.npy} {THRESHOLD}Where {THRESHOLD} is an integer specifying Total number of array elements which trigger summarization rather than full repr. Default is sys.maxsize.
npp {PATH_TO_YOUR_FILE.npy}Will attempt to print your saved matrix & itss dimensions using prettymatrix:
(2x2)
┌ ┐
│ 1 22 │
│ 333 4444 │
└ ┘
