ontobio

Release 2.9.12

Library for working with OBO Library Ontologies and associations

Homepage PyPI Python

Keywords
ontology, graph, obo, owl, sparql, networkx, network, bioinformatics, gene-ontology, obofoundry, ontology-tools, python, rdf, semantic-web
License
BSD-3-Clause
Install
pip install ontobio==2.9.12

Documentation

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Stats

Dependencies
30
Dependent packages
2
Dependent repositories
1
Total releases
208
Latest release
First release
Stars
125
Forks
31
Watchers
21
Contributors
20
Repository size
66.8 MB
SourceRank
11

Releases

0.2.12
0.2.11
0.1.2
0.1.3
0.1.4
0.1.5
0.1.6
0.2.1
0.2.10
0.2.13
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Contributors

Eric Douglass Chris Mungall Sierra Moxon dustine32 Kent Shefchek mugitty Deepak kltm Lance Hannestad Richard Bruskiewich lpalbou Suzanna Lewis diatomsRcool Faisal Alquaddoomi Damien Goutte-Gattat vanaukenk Jim Balhoff Valerio Arnaboldi dependabot[bot] Mark Diekhans


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