Welcome to PathFlowAI 👋

A Convenient High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology

🏠 Homepage

NOTE: MedRxiv manuscript is currently being screened. The manuscript and set-up wiki will be posted on this repository shortly! Stay tuned!

Install

First, install openslide.

pip install pathflowai

Usage

pathflowai-preprocess -h
pathflowai-train_model -h
pathflowai-monitor -h
pathflowai-visualize -h

See Wiki for more information on setting up and running the workflow.

Author

👤 Joshua Levy

• Github: @jlevy44

🤝 Contributing

Contributions, issues and feature requests are welcome!
Feel free to check issues page.