pawflim

Denoising via adaptive binning for FLIM datasets.


Keywords
FLIM, pawFLIM, binlets, denoising, adaptive, wavelets, phasors
License
Other
Install
pip install pawflim==1.0.2

Documentation

pawFLIM: denoising via adaptive binning for FLIM datasets

Installation

pawFLIM can be installed from PyPI:

pip install pawflim

Usage

import numpy as np
from pawflim import pawflim

data = np.empty((3, *shape), dtype=complex)
data[0] = ... # number of photons
data[1] = ... # n-th fourier coefficient
data[2] = ... # 2n-th fourier coefficient

denoised = pawflim(data, n_sigmas=2)

phasor = denoised[1] / denoised[0]

See the notebook in examples for an example with simulated data.