PubMed XML Parser Installation python3 -m pip install pubmed_xml Usage CommandLine pubmed_xml --help # parse single pubmed_xml 30003000 # parse batch pubmed_xml 30003000,30003001,30003002 # parse multiple pubmed_xml 30003000 30003001 30003002 # parse from xml file pubmed_xml tests/pubmed22n1543.xml.gz -o out.jl # save file pubmed_xml 30003000,30003001,30003002 -o out.jl Python from pubmed_xml import Pubmed_XML_Parser pubmed = Pubmed_XML_Parser() for article in pubmed.parse('30003000,30003001,30003002'): print(article) # Article<30003002> print(article.data) # dict object print(article.to_json(indent=2)) # json string print(article.pmid, article.title, article.abstract) # by attribute print(article['pmid'], article['title'], article['abstract']) # by key
