single cell trajectory inference framework based on Entropic Gaussian mixture Optimal Transport

$ pip install scegot

• Python3

• GraphViz

  Click here to learn how to install GraphViz (official documentation).

The tutorial is available here.

Please see the following paper: Yachimura, T. et al. scEGOT: single-cell trajectory inference framework based on entropic Gaussian mixture optimal transport. BMC Bioinformatics 25, 388 (2024).