This plugin provides a wrapper for some of the programs of the Warp software.
You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
- Stable version
scipion installp -p scipion-em-warp
-
Developer's version
- download repository
git clone -b devel https://github.com/scipion-em/scipion-em-warp.git
- install
scipion installp -p /path/to/scipion-em-warp --devel
To check the installation, simply run one of the following Scipion tests:
- scipion3 tests warp.tests.protocols_tomo_tests.TestWarpEstimateCTFTomoReconstruction
- scipion3 tests warp.tests.protocols_tomo_tests.TestDeconvolveTomo
- scipion3 tests warp.tests.test_protocols.TestWarpMotionCorrection
- scipion3 tests warp.tests.test_protocols.TestDeconvolveMics
- deconvolve micrographs
- deconvolve tomograms
- deconvolve tilt-series
- tomo reconstruction
- motion correction (for SPA)
- tilt-series motion and ctf estimation (includes ctf estimation and defocus handedness)
- Dimitry Tegunov and Patrick Cramer. Real-time cryo-electron microscopy data preprocessing with Warp. Nature Methods 16(11), 2019, p. 1146-1152.
