SecMet - A Python Library to Handle Secondary Metabolite Annotations

This library is intended to make dealing with secondary metabolite annotations as provided by databases like MIBiG or tools like antiSMASH easier from within python programs.

At the moment, it just supports the GenBank file format used by MIBiG and antiSMASH, not the MIBiG JSON format. Support for this is planned.

Installing

SecMet is a normal Python module, so you can install it from a local repository checkout using python setup.py install, or from PyPi using pip install secmet.

Note that secmet is still in early development, and not fit for production use.

Packaging

Because I perfer to work with markdown and Python forces me to use reStructuredText, a Makefile helps in order to create a new PyPi release. The pandoc utility is required. Run the Makefile using make release to create a new secmet library sdist.

License

Copyright 2015  Kai Blin <kblin@biosustain.dtu.dk>

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.