solvation-analysis

A toolkit to analyze solvation structure in molecular dynamics trajectories.


Keywords
python, science, chemistry, biophysics, molecular-dynamics, computational-chemistry, molecular-simulation, analysis, trajectory-analysis, solvation
License
Other
Install
pip install solvation-analysis==0.3.5

Documentation

SolvationAnalysis

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Solvation analysis implements a robust, cohesive, and fast set of methods for analyzing the solvation structure of a liquid. It seamlessly integrates with MDAnalysis, making use of the core AtomGroup and Universe data structures to parse solvation information. If you are interested in understanding the solvation structure of a liquid, this package is for you!

Find documentation and tutorials on readthedocs.

Installing SolvationAnalysis

SolvationAnalysis is available on PyPI and conda-forge can be installed with pip or conda:

pip install solvation-analysis

# or

conda install -c conda-forge solvation_analysis

Contributing

Contributions, both issues and PRs, are welcome. If you'd like to contribute, we ask that you follow the community guidelines outlined in the MDAnalysis Code of Conduct.

Citation

This work is described in JOSS, please cite it if you make use of this package in published work.


Project based on the Computational Molecular Science Python Cookiecutter version 1.5.