statutils
This package is aselections of various utils for statistics. It is inspired by R functions and packages.
Usage
Adjust p values for multiple comparisons
Use p_adjust
method to adjust p-values with Bonferroni correction, Holm-Bonferroni correction or others. p_adjust
is a rewrite of R's p.adjust
function with the numpy arrays.
Use it in the same way.
Supported methods for multiple comparison (method
argument):
-
bonferroni
Bonferroni correction -
holm
Holm (1979) -
hochberg
Hochberg (1988) -
hommel
Hommel (1988) -
BH
Benjamini & Hochberg (1995) -
BY
Benjamini & Yekutieli (2001) -
none
as a pass-through option
Example
from statutils.multi_comparison import p_adjust
p = [0.005, 0.04, 0.01, 0.5, 0.01, 0.7]
p_adjusted = p_adjust(p, method='holm')