Pipeline management software for clusters.

pip install toil-ionox0==0.0.10



  • This is ian johnson's fork of DataBiosphere Toil package with in progress fixes for lsf and CWL at MSKCC.
  • Releases are made off of ij/toil-ionox0 branch and are hosted on pypi at https://pypi.org/project/toil-ionox0/ starting from 0.0.1

ATTENTION: Toil has moved from https://github.com/BD2KGenomics/toil to https://github.com/DataBiosphere/toil as of July 5th, 2018.

Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system, written entirely in Python, and designed around the principles of functional programming.

Our next scheduled release is July 11, 2019.

  • Check the website for a description of Toil and its features.
  • Full documentation for the latest stable release can be found at Read the Docs.
  • See our occasional blog for tutorials.
  • Google Groups discussion forum and videochat invite list.
Join the chat at https://gitter.im/bd2k-genomics-toil/Lobby