vessel-express-napari

A simple plugin for 3D vessel segmentation of LSFM images

This napari plugin can be used to optimize the segmentation parameters for the main VesselExpress software platform.

Installation

The easiest way to install the plugin is to open napari, go to Plugins, then Install/Uninstall plugins. You will be able to find the plugin by name "vessel-express-napari".

Or, you can install vessel-express-napari via pip:

pip install vessel-express-napari

To install latest development version :

pip install git+https://github.com/MMV-Lab/vessel-express-napari.git

Documentation

We provide a quick start guide to explain the important pieces of this plugin. Suggestions and feature quests are very welcomed.

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "vessel-express-napari" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.